Transcript: ENSMUST00000379338.1 Gm42538-203

Description

predicted gene 42538 [Source:MGI Symbol;Acc:MGI:5662675]

Location

Chromosome 3: 101,331,257-101,334,304 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 788 variant alleles and maps to 11 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000106137.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000379338.1	Gm42538-203	814	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379346.1	Gm42538-211	762	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000199431.3	Gm42538-202	759	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000379339.1	Gm42538-204	749	No protein	-	lncRNA	-
ENSMUST00000379347.1	Gm42538-212	706	No protein	-	lncRNA	-
ENSMUST00000379344.1	Gm42538-209	697	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379341.1	Gm42538-206	653	No protein	-	lncRNA	-
ENSMUST00000379340.1	Gm42538-205	637	No protein	-	lncRNA	-
ENSMUST00000379348.1	Gm42538-213	615	No protein	-	lncRNA	-
ENSMUST00000196233.3	Gm42538-201	613	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000379343.1	Gm42538-208	592	No protein	-	lncRNA	-
ENSMUST00000379342.1	Gm42538-207	573	No protein	-	lncRNA	-
ENSMUST00000379345.1	Gm42538-210	532	No protein	-	lncRNA	-
ENSMUST00000379349.1	Gm42538-214	513	No protein	-	lncRNA	-
ENSMUST00000379350.1	Gm42538-215	462	No protein	-	lncRNA	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 814 bps,

Version

ENSMUST00000379338.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000379338.1 Gm42538-203

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Transcript: ENSMUST00000379338.1 Gm42538-203

Summary

About Us

Get help

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