Transcript: ENSMUST00000374084.1 Gm44442-211

Description

predicted gene, 44442 [Source:MGI Symbol;Acc:MGI:5690834]

Location

Chromosome 6: 99,854,444-99,873,818 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 1532 variant alleles and maps to 357 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000107528.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000374077.1	Gm44442-204	780	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000374084.1	Gm44442-211	1347	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000374322.1	Gm44442-246	1338	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000374319.1	Gm44442-243	1320	No protein	-	lncRNA	-
ENSMUST00000374321.1	Gm44442-245	1213	No protein	-	lncRNA	-
ENSMUST00000374320.1	Gm44442-244	1210	No protein	-	lncRNA	-
ENSMUST00000374324.1	Gm44442-248	1209	No protein	-	lncRNA	-
ENSMUST00000374085.1	Gm44442-212	1162	No protein	-	lncRNA	-
ENSMUST00000374323.1	Gm44442-247	1156	No protein	-	lncRNA	-
ENSMUST00000374086.1	Gm44442-213	1136	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000204298.3	Gm44442-202	1048	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000374087.1	Gm44442-214	1022	No protein	-	lncRNA	-
ENSMUST00000204919.3	Gm44442-203	1007	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000374296.1	Gm44442-220	888	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000374078.1	Gm44442-205	849	No protein	-	lncRNA	-
ENSMUST00000201580.3	Gm44442-201	823	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000374295.1	Gm44442-219	817	No protein	-	lncRNA	-
ENSMUST00000374088.1	Gm44442-215	807	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000374298.1	Gm44442-222	769	No protein	-	lncRNA	-
ENSMUST00000374302.1	Gm44442-226	752	No protein	-	lncRNA	-
ENSMUST00000374293.1	Gm44442-217	746	No protein	-	lncRNA	-
ENSMUST00000374082.1	Gm44442-209	720	No protein	-	lncRNA	-
ENSMUST00000374303.1	Gm44442-227	710	No protein	-	lncRNA	-
ENSMUST00000374297.1	Gm44442-221	705	No protein	-	lncRNA	-
ENSMUST00000374318.1	Gm44442-242	690	No protein	-	lncRNA	-
ENSMUST00000374311.1	Gm44442-235	688	No protein	-	lncRNA	-
ENSMUST00000374294.1	Gm44442-218	675	No protein	-	lncRNA	-
ENSMUST00000374299.1	Gm44442-223	671	No protein	-	lncRNA	-
ENSMUST00000374080.1	Gm44442-207	668	No protein	-	lncRNA	-
ENSMUST00000374306.1	Gm44442-230	660	No protein	-	lncRNA	-
ENSMUST00000374317.1	Gm44442-241	652	No protein	-	lncRNA	-
ENSMUST00000374081.1	Gm44442-208	649	No protein	-	lncRNA	-
ENSMUST00000374305.1	Gm44442-229	625	No protein	-	lncRNA	-
ENSMUST00000374314.1	Gm44442-238	615	No protein	-	lncRNA	-
ENSMUST00000374313.1	Gm44442-237	612	No protein	-	lncRNA	-
ENSMUST00000374310.1	Gm44442-234	577	No protein	-	lncRNA	-
ENSMUST00000374079.1	Gm44442-206	575	No protein	-	lncRNA	-
ENSMUST00000374326.1	Gm44442-250	571	No protein	-	lncRNA	-
ENSMUST00000374301.1	Gm44442-225	558	No protein	-	lncRNA	-
ENSMUST00000374309.1	Gm44442-233	558	No protein	-	lncRNA	-
ENSMUST00000374304.1	Gm44442-228	557	No protein	-	lncRNA	-
ENSMUST00000374307.1	Gm44442-231	546	No protein	-	lncRNA	-
ENSMUST00000374083.1	Gm44442-210	542	No protein	-	lncRNA	-
ENSMUST00000374316.1	Gm44442-240	526	No protein	-	lncRNA	-
ENSMUST00000374300.1	Gm44442-224	521	No protein	-	lncRNA	-
ENSMUST00000374308.1	Gm44442-232	515	No protein	-	lncRNA	-
ENSMUST00000374312.1	Gm44442-236	511	No protein	-	lncRNA	-
ENSMUST00000374315.1	Gm44442-239	432	No protein	-	lncRNA	-
ENSMUST00000374325.1	Gm44442-249	418	No protein	-	lncRNA	-
ENSMUST00000374089.1	Gm44442-216	282	No protein	-	lncRNA	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,347 bps,

Version

ENSMUST00000374084.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000374084.1 Gm44442-211

Summary

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Transcript: ENSMUST00000374084.1 Gm44442-211

Summary

About Us

Get help

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