Transcript: ENSMUST00000317538.1 Lichi-206

Description

long non-coding RNA in Chat intron [Source:MGI Symbol;Acc:MGI:3781168]

Gene Synonyms

Gm2990, Litchi

Location

Chromosome 14: 32,184,900-32,205,519 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1545 variant alleles and maps to 38 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000097794.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000317535.1	Lichi-203	1082	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000317538.1	Lichi-206	2093	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000317540.1	Lichi-208	1417	No protein	-	lncRNA	-
ENSMUST00000180662.4	Lichi-201	1359	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000317537.1	Lichi-205	1298	No protein	-	lncRNA	-
ENSMUST00000317536.1	Lichi-204	1249	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000317539.1	Lichi-207	1102	No protein	-	lncRNA	-
ENSMUST00000317544.1	Lichi-212	1089	No protein	-	lncRNA	-
ENSMUST00000317541.1	Lichi-209	1000	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000317542.1	Lichi-210	928	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000228806.3	Lichi-202	520	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000317543.1	Lichi-211	374	No protein	-	lncRNA	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,093 bps,

Version

ENSMUST00000317538.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000317538.1 Lichi-206

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Transcript: ENSMUST00000317538.1 Lichi-206

Summary

About Us

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