Transcript: ENSMUST00000295997.1 Gm42865-225

Description

predicted gene 42865 [Source:MGI Symbol;Acc:MGI:5663002]

Location

Chromosome 5: 112,791,736-112,799,988 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1157 variant alleles and maps to 11 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000104807.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000295975.1	Gm42865-203	528	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000295997.1	Gm42865-225	1721	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000295990.1	Gm42865-218	1508	No protein	-	lncRNA	-
ENSMUST00000295998.1	Gm42865-226	1505	No protein	-	lncRNA	-
ENSMUST00000198371.2	Gm42865-202	1436	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000295999.1	Gm42865-227	1370	No protein	-	lncRNA	-
ENSMUST00000296729.1	Gm42865-228	1312	No protein	-	lncRNA	-
ENSMUST00000295980.1	Gm42865-208	977	No protein	-	lncRNA	-
ENSMUST00000295995.1	Gm42865-223	923	No protein	-	lncRNA	-
ENSMUST00000295979.1	Gm42865-207	907	No protein	-	lncRNA	-
ENSMUST00000295981.1	Gm42865-209	829	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000295989.1	Gm42865-217	772	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000295985.1	Gm42865-213	736	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000295982.1	Gm42865-210	733	No protein	-	lncRNA	-
ENSMUST00000295984.1	Gm42865-212	705	No protein	-	lncRNA	-
ENSMUST00000295986.1	Gm42865-214	705	No protein	-	lncRNA	-
ENSMUST00000295978.1	Gm42865-206	698	No protein	-	lncRNA	-
ENSMUST00000295991.1	Gm42865-219	693	No protein	-	lncRNA	-
ENSMUST00000295996.1	Gm42865-224	671	No protein	-	lncRNA	-
ENSMUST00000295994.1	Gm42865-222	669	No protein	-	lncRNA	-
ENSMUST00000295983.1	Gm42865-211	624	No protein	-	lncRNA	-
ENSMUST00000197981.2	Gm42865-201	613	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000295993.1	Gm42865-221	575	No protein	-	lncRNA	-
ENSMUST00000295987.1	Gm42865-215	567	No protein	-	lncRNA	-
ENSMUST00000295976.1	Gm42865-204	492	No protein	-	lncRNA	-
ENSMUST00000295992.1	Gm42865-220	435	No protein	-	lncRNA	-
ENSMUST00000295977.1	Gm42865-205	430	No protein	-	lncRNA	-
ENSMUST00000295988.1	Gm42865-216	333	No protein	-	lncRNA	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,721 bps,

Version

ENSMUST00000295997.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000295997.1 Gm42865-225

Summary

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Transcript: ENSMUST00000295997.1 Gm42865-225

Summary

About Us

Get help

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