Transcript: ENSMUST00000265177.1 Gm42882-203

Description

predicted gene 42882 [Source:MGI Symbol;Acc:MGI:5663019]

Location

Chromosome 5: 134,484,845-134,492,381 forward strand.

About this transcript

This transcript has 5 exons, is associated with 986 variant alleles and maps to 345 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000106969.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000265176.1	Gm42882-202	900	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000265177.1	Gm42882-203	922	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000201788.3	Gm42882-201	744	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000265178.1	Gm42882-204	709	No protein	-	lncRNA	-
ENSMUST00000265179.1	Gm42882-205	681	No protein	-	lncRNA	-
ENSMUST00000265180.1	Gm42882-206	577	No protein	-	lncRNA	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 922 bps,

Version

ENSMUST00000265177.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000265177.1 Gm42882-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000265177.1 Gm42882-203

Summary

About Us

Get help

Our sister sites

Follow us