Transcript: ENSMUST00000249668.2 Nlgn4l-201

Description

neuroligin 4-like [Source:MGI Symbol;Acc:MGI:3775191]

Gene Synonyms

NL-4, NL4, Nlgn4

Location

Chromosome X: 169,067,543-169,087,740 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 20 domains and features and maps to 2 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000121607.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSMUST00000249668.2	Nlgn4l-201	3402	606aa	ENSMUSP00000159847.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9WUR0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000249671.1	Nlgn4l-204	2345	269aa	ENSMUSP00000159849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9WUT9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000249669.1	Nlgn4l-202	3733	190aa	ENSMUSP00000159848.1	Nonsense mediated decay	A0AAA9WVY2	-
ENSMUST00000249670.1	Nlgn4l-203	4012	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 3,402 bps, Translation length: 606 residues

Version

ENSMUST00000249668.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000249668.2 Nlgn4l-201

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Transcript: ENSMUST00000249668.2 Nlgn4l-201

Summary

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