Transcript: ENSMUST00000239408.2 Trat1-203

Description

T cell receptor associated transmembrane adaptor 1 [Source:MGI Symbol;Acc:MGI:1924897]

Gene Synonyms

C030046M14Rik, Tcrim, Trim

Location

Chromosome 16: 48,555,053-48,592,319 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 11 domains and features, is associated with 2430 variant alleles and maps to 82 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000030775.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000231701.3	Trat1-202	4665	187aa	ENSMUSP00000155986.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3UU67-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000239408.2	Trat1-203	684	197aa	ENSMUSP00000159369.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37352	A0A338P6G9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000170861.4	Trat1-201	647	54aa	ENSMUSP00000129808.4	Nonsense mediated decay		A0A0R4J237	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 684 bps, Translation length: 197 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37352

Version

ENSMUST00000239408.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000239408.2 Trat1-203

Summary

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Transcript: ENSMUST00000239408.2 Trat1-203

Summary

About Us

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