Transcript: ENSMUST00000239390.2

Description

novel transcript

Location

Chromosome 4: 19,933,841-20,005,671 reverse strand.

About this transcript

This transcript has 8 exons, is associated with 4774 variant alleles and maps to 67 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000121863.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000239390.2	-	2365	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000125909.3	-	1387	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000309406.1	-	935	No protein	-	lncRNA	-
ENSMUST00000309403.1	-	935	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000309404.1	-	912	No protein	-	lncRNA	-
ENSMUST00000309400.1	-	884	No protein	-	lncRNA	-
ENSMUST00000309405.1	-	854	No protein	-	lncRNA	-
ENSMUST00000309402.1	-	732	No protein	-	lncRNA	-
ENSMUST00000309401.1	-	680	No protein	-	lncRNA	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 2,365 bps,

Version

ENSMUST00000239390.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000239390.2

Summary

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Transcript: ENSMUST00000239390.2

Summary

About Us

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