Transcript: ENSMUST00000238054.2 Fam204a-206

Description

family with sequence similarity 204, member A [Source:MGI Symbol;Acc:MGI:1289174]

Gene Synonyms

2310065H12Rik, 2610015K05Rik, D19Ertd737e

Location

Chromosome 19: 60,187,679-60,215,118 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 12 domains and features, is associated with 1579 variant alleles and maps to 184 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000057858.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000065286.2	Fam204a-201	2035	236aa	ENSMUSP00000063913.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29939	Q8C6C7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238054.2	Fam204a-206	951	236aa	ENSMUSP00000158259.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29939	Q8C6C7	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000235293.2	Fam204a-202	1598	83aa	ENSMUSP00000158173.2	Nonsense mediated decay		A0A494B904	-
ENSMUST00000237339.2	Fam204a-205	725	83aa	ENSMUSP00000157433.2	Nonsense mediated decay		A0A494B904	-
ENSMUST00000238119.2	Fam204a-207	634	83aa	ENSMUSP00000157480.2	Nonsense mediated decay		A0A494B904	-
ENSMUST00000235995.2	Fam204a-203	1146	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000237120.2	Fam204a-204	4184	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 951 bps, Translation length: 236 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8C6C7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29939

Version

ENSMUST00000238054.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

alternative 5' UTR [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000238054.2 Fam204a-206

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Transcript: ENSMUST00000238054.2 Fam204a-206

Summary

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