Transcript: ENSMUST00000236560.2 Gm50388-201

Description

predicted gene, 50388 [Source:MGI Symbol;Acc:MGI:6303291]

Location

About this transcript

This transcript has 11 exons, is annotated with 1 domain and feature, is associated with 984 variant alleles and maps to 446 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000236560.2	Gm50388-201	3572	415aa	ENSMUSP00000158273.2	Nonsense mediated decay	CCDS29446	Q8BWP8-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 11, Coding exons: 2, Transcript length: 3,572 bps, Translation length: 415 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BWP8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29446

Version

ENSMUST00000236560.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.