Transcript: ENSMUST00000235932.2 Pi4k2a-202

Description

phosphatidylinositol 4-kinase type 2 alpha [Source:MGI Symbol;Acc:MGI:1934031]

Location

Chromosome 19: 42,078,909-42,110,470 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 9 domains and features, is associated with 2467 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000025178.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000066778.6	Pi4k2a-201	3604	479aa	ENSMUSP00000069284.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29821	Q2TBE6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235932.2	Pi4k2a-202	1939	479aa	ENSMUSP00000158574.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29821	Q2TBE6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000235988.2	Pi4k2a-203	4267	386aa	ENSMUSP00000158577.2	Nonsense mediated decay		A0A494BBQ4	-
ENSMUST00000238085.2	Pi4k2a-204	3381	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,939 bps, Translation length: 479 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q2TBE6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29821

Version

ENSMUST00000235932.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000235932.2 Pi4k2a-202

Summary

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Transcript: ENSMUST00000235932.2 Pi4k2a-202

Summary

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