Transcript: ENSMUST00000220590.3 Gm56557-201

Description

predicted gene, 56557 [Source:MGI Symbol;Acc:MGI:7337028]

Location

Chromosome 12: 85,571,433-85,589,054 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1623 variant alleles and maps to 23 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000120232.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000287588.1	Gm56557-205	508	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000220590.3	Gm56557-201	1306	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000287591.1	Gm56557-208	1278	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000287590.1	Gm56557-207	1232	No protein	-	lncRNA	-
ENSMUST00000287592.1	Gm56557-209	1067	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000287597.1	Gm56557-214	1022	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242867.2	Gm56557-203	996	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000287593.1	Gm56557-210	914	No protein	-	lncRNA	-
ENSMUST00000287594.1	Gm56557-211	837	No protein	-	lncRNA	-
ENSMUST00000243227.2	Gm56557-204	806	No protein	-	lncRNA	-
ENSMUST00000287596.1	Gm56557-213	766	No protein	-	lncRNA	-
ENSMUST00000287595.1	Gm56557-212	689	No protein	-	lncRNA	-
ENSMUST00000242010.2	Gm56557-202	516	No protein	-	lncRNA	-
ENSMUST00000287589.1	Gm56557-206	492	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000287599.1	Gm56557-216	424	No protein	-	lncRNA	-
ENSMUST00000287600.1	Gm56557-217	376	No protein	-	lncRNA	-
ENSMUST00000287598.1	Gm56557-215	350	No protein	-	lncRNA	-
ENSMUST00000287601.1	Gm56557-218	297	No protein	-	lncRNA	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,306 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENSMUST00000220590.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000220590.3 Gm56557-201

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Transcript: ENSMUST00000220590.3 Gm56557-201

Summary

About Us

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