Transcript: ENSMUST00000200146.2 Chil5-203

Description

chitinase-like 5 [Source:MGI Symbol;Acc:MGI:2676649]

Gene Synonyms

Bclp1, Bclp2, Chi3l7

Location

Chromosome 3: 105,924,448-105,940,130 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 17 domains and features, is associated with 1052 variant alleles and maps to 163 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000043873.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000200146.2	Chil5-203	1296	431aa	ENSMUSP00000142477.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38584	A0A0G2JDS2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000066537.10	Chil5-202	969	251aa	ENSMUSP00000065043.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F7AQE8	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000054973.8	Chil5-201	1052	96aa	ENSMUSP00000052345.4	Nonsense mediated decay		F7D8T8	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,296 bps, Translation length: 431 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS38584

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000200146.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000200146.2 Chil5-203

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Transcript: ENSMUST00000200146.2 Chil5-203

Summary

About Us

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