Transcript: ENSMUST00000197321.6 1700061E17Rik-203

Description

RIKEN cDNA 1700061E17 gene [Source:MGI Symbol;Acc:MGI:3642196]

Location

Chromosome 9: 110,818,567-110,837,135 forward strand.

About this transcript

This transcript has 7 exons, is associated with 1704 variant alleles and maps to 95 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000102060.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000197279.2	1700061E17Rik-202	843	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000266769.1	1700061E17Rik-217	1543	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000197321.6	1700061E17Rik-203	3862	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245495.1	1700061E17Rik-216	2987	No protein	-	lncRNA	-
ENSMUST00000242131.2	1700061E17Rik-206	2491	No protein	-	lncRNA	-
ENSMUST00000266790.1	1700061E17Rik-238	2008	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245025.2	1700061E17Rik-214	1983	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000266799.1	1700061E17Rik-247	1929	No protein	-	lncRNA	-
ENSMUST00000266771.1	1700061E17Rik-219	1725	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000266774.1	1700061E17Rik-222	1699	No protein	-	lncRNA	-
ENSMUST00000241368.1	1700061E17Rik-205	1679	No protein	-	lncRNA	-
ENSMUST00000243647.1	1700061E17Rik-211	1663	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000266795.1	1700061E17Rik-243	1590	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000266802.1	1700061E17Rik-250	1505	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000266783.1	1700061E17Rik-231	1458	No protein	-	lncRNA	-
ENSMUST00000266780.1	1700061E17Rik-228	1449	No protein	-	lncRNA	-
ENSMUST00000266785.1	1700061E17Rik-233	1404	No protein	-	lncRNA	-
ENSMUST00000266770.1	1700061E17Rik-218	1392	No protein	-	lncRNA	-
ENSMUST00000240913.2	1700061E17Rik-204	1329	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243535.2	1700061E17Rik-210	1308	No protein	-	lncRNA	-
ENSMUST00000266789.1	1700061E17Rik-237	1307	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242596.2	1700061E17Rik-208	1305	No protein	-	lncRNA	-
ENSMUST00000266775.1	1700061E17Rik-223	1274	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000266784.1	1700061E17Rik-232	1257	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243499.2	1700061E17Rik-209	1210	No protein	-	lncRNA	-
ENSMUST00000266776.1	1700061E17Rik-224	1195	No protein	-	lncRNA	-
ENSMUST00000266779.1	1700061E17Rik-227	1193	No protein	-	lncRNA	-
ENSMUST00000266791.1	1700061E17Rik-239	1188	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000266786.1	1700061E17Rik-234	1173	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000266796.1	1700061E17Rik-244	1168	No protein	-	lncRNA	-
ENSMUST00000266778.1	1700061E17Rik-226	1152	No protein	-	lncRNA	-
ENSMUST00000266787.1	1700061E17Rik-235	1149	No protein	-	lncRNA	-
ENSMUST00000266788.1	1700061E17Rik-236	1144	No protein	-	lncRNA	-
ENSMUST00000266800.1	1700061E17Rik-248	1134	No protein	-	lncRNA	-
ENSMUST00000266801.1	1700061E17Rik-249	1123	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000244088.2	1700061E17Rik-212	1109	No protein	-	lncRNA	-
ENSMUST00000185439.3	1700061E17Rik-201	1097	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000242348.2	1700061E17Rik-207	1095	No protein	-	lncRNA	-
ENSMUST00000245428.2	1700061E17Rik-215	1069	No protein	-	lncRNA	-
ENSMUST00000266781.1	1700061E17Rik-229	1037	No protein	-	lncRNA	-
ENSMUST00000266794.1	1700061E17Rik-242	1030	No protein	-	lncRNA	-
ENSMUST00000266782.1	1700061E17Rik-230	1023	No protein	-	lncRNA	-
ENSMUST00000266797.1	1700061E17Rik-245	1017	No protein	-	lncRNA	-
ENSMUST00000266803.1	1700061E17Rik-251	1008	No protein	-	lncRNA	-
ENSMUST00000266772.1	1700061E17Rik-220	1004	No protein	-	lncRNA	-
ENSMUST00000266798.1	1700061E17Rik-246	997	No protein	-	lncRNA	-
ENSMUST00000266777.1	1700061E17Rik-225	985	No protein	-	lncRNA	-
ENSMUST00000266804.1	1700061E17Rik-252	939	No protein	-	lncRNA	-
ENSMUST00000244852.1	1700061E17Rik-213	928	No protein	-	lncRNA	-
ENSMUST00000266792.1	1700061E17Rik-240	842	No protein	-	lncRNA	-
ENSMUST00000266793.1	1700061E17Rik-241	838	No protein	-	lncRNA	-
ENSMUST00000266773.1	1700061E17Rik-221	829	No protein	-	lncRNA	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 3,862 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000197321.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000197321.6 1700061E17Rik-203

Summary

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Transcript: ENSMUST00000197321.6 1700061E17Rik-203

Summary

About Us

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