Transcript: ENSMUST00000190193.8 Col6a5-202

Description

collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]

Gene Synonyms

Col6a5, Gm7455

Location

Chromosome 9: 105,733,277-105,837,842 reverse strand.

About this transcript

This transcript has 41 exons, is annotated with 84 domains and features, is associated with 7341 variant alleles and maps to 304 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091345.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000190193.8	Col6a5-202	9289	2640aa	ENSMUSP00000139398.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS85720	A0A140T8W1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000189127.2	Col6a5-201	779	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 41, Coding exons: 40, Transcript length: 9,289 bps, Translation length: 2,640 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS85720

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000190193.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

NAGNAG splice site [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000190193.8 Col6a5-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000190193.8 Col6a5-202

Summary

About Us

Get help

Our sister sites

Follow us