Transcript: ENSMUST00000189594.3 1700047M11Rik-202

Description

RIKEN cDNA 1700047M11 gene [Source:MGI Symbol;Acc:MGI:1914580]

Location

Chromosome 1: 182,115,506-182,130,890 forward strand.

About this transcript

This transcript has 3 exons, is associated with 1438 variant alleles and maps to 69 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000100147.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000301789.1	1700047M11Rik-207	685	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000189594.3	1700047M11Rik-202	2656	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000301830.1	1700047M11Rik-248	2645	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000301837.1	1700047M11Rik-255	1624	No protein	-	lncRNA	-
ENSMUST00000301855.1	1700047M11Rik-273	1157	No protein	-	lncRNA	-
ENSMUST00000301856.1	1700047M11Rik-274	1152	No protein	-	lncRNA	-
ENSMUST00000301804.1	1700047M11Rik-222	1122	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000301798.1	1700047M11Rik-216	1073	No protein	-	lncRNA	-
ENSMUST00000301809.1	1700047M11Rik-227	1072	No protein	-	lncRNA	-
ENSMUST00000301792.1	1700047M11Rik-210	1064	No protein	-	lncRNA	-
ENSMUST00000301801.1	1700047M11Rik-219	1052	No protein	-	lncRNA	-
ENSMUST00000301826.1	1700047M11Rik-244	1049	No protein	-	lncRNA	-
ENSMUST00000301797.1	1700047M11Rik-215	1042	No protein	-	lncRNA	-
ENSMUST00000301800.1	1700047M11Rik-218	1025	No protein	-	lncRNA	-
ENSMUST00000301803.1	1700047M11Rik-221	1014	No protein	-	lncRNA	-
ENSMUST00000301829.1	1700047M11Rik-247	1013	No protein	-	lncRNA	-
ENSMUST00000301799.1	1700047M11Rik-217	1002	No protein	-	lncRNA	-
ENSMUST00000301791.1	1700047M11Rik-209	986	No protein	-	lncRNA	-
ENSMUST00000301835.1	1700047M11Rik-253	973	No protein	-	lncRNA	-
ENSMUST00000246234.2	1700047M11Rik-205	961	No protein	-	lncRNA	-
ENSMUST00000301811.1	1700047M11Rik-229	957	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000301812.1	1700047M11Rik-230	956	No protein	-	lncRNA	-
ENSMUST00000301793.1	1700047M11Rik-211	948	No protein	-	lncRNA	-
ENSMUST00000301814.1	1700047M11Rik-232	945	No protein	-	lncRNA	-
ENSMUST00000301818.1	1700047M11Rik-236	945	No protein	-	lncRNA	-
ENSMUST00000301796.1	1700047M11Rik-214	940	No protein	-	lncRNA	-
ENSMUST00000301805.1	1700047M11Rik-223	939	No protein	-	lncRNA	-
ENSMUST00000301834.1	1700047M11Rik-252	934	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000301821.1	1700047M11Rik-239	933	No protein	-	lncRNA	-
ENSMUST00000301795.1	1700047M11Rik-213	926	No protein	-	lncRNA	-
ENSMUST00000301802.1	1700047M11Rik-220	917	No protein	-	lncRNA	-
ENSMUST00000301816.1	1700047M11Rik-234	916	No protein	-	lncRNA	-
ENSMUST00000244661.2	1700047M11Rik-204	879	No protein	-	lncRNA	-
ENSMUST00000301832.1	1700047M11Rik-250	866	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000301838.1	1700047M11Rik-256	857	No protein	-	lncRNA	-
ENSMUST00000301817.1	1700047M11Rik-235	856	No protein	-	lncRNA	-
ENSMUST00000246608.2	1700047M11Rik-206	852	No protein	-	lncRNA	-
ENSMUST00000301819.1	1700047M11Rik-237	849	No protein	-	lncRNA	-
ENSMUST00000301839.1	1700047M11Rik-257	848	No protein	-	lncRNA	-
ENSMUST00000301815.1	1700047M11Rik-233	845	No protein	-	lncRNA	-
ENSMUST00000301827.1	1700047M11Rik-245	845	No protein	-	lncRNA	-
ENSMUST00000301836.1	1700047M11Rik-254	841	No protein	-	lncRNA	-
ENSMUST00000301824.1	1700047M11Rik-242	836	No protein	-	lncRNA	-
ENSMUST00000241209.2	1700047M11Rik-203	834	No protein	-	lncRNA	-
ENSMUST00000185216.4	1700047M11Rik-201	834	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000301820.1	1700047M11Rik-238	833	No protein	-	lncRNA	-
ENSMUST00000301842.1	1700047M11Rik-260	829	No protein	-	lncRNA	-
ENSMUST00000301823.1	1700047M11Rik-241	823	No protein	-	lncRNA	-
ENSMUST00000301843.1	1700047M11Rik-261	798	No protein	-	lncRNA	-
ENSMUST00000301822.1	1700047M11Rik-240	787	No protein	-	lncRNA	-
ENSMUST00000301810.1	1700047M11Rik-228	785	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000301807.1	1700047M11Rik-225	772	No protein	-	lncRNA	-
ENSMUST00000301828.1	1700047M11Rik-246	771	No protein	-	lncRNA	-
ENSMUST00000301806.1	1700047M11Rik-224	763	No protein	-	lncRNA	-
ENSMUST00000301790.1	1700047M11Rik-208	762	No protein	-	lncRNA	-
ENSMUST00000301808.1	1700047M11Rik-226	759	No protein	-	lncRNA	-
ENSMUST00000301794.1	1700047M11Rik-212	743	No protein	-	lncRNA	-
ENSMUST00000301813.1	1700047M11Rik-231	741	No protein	-	lncRNA	-
ENSMUST00000301825.1	1700047M11Rik-243	716	No protein	-	lncRNA	-
ENSMUST00000301831.1	1700047M11Rik-249	704	No protein	-	lncRNA	-
ENSMUST00000301833.1	1700047M11Rik-251	669	No protein	-	lncRNA	-
ENSMUST00000301844.1	1700047M11Rik-262	665	No protein	-	lncRNA	-
ENSMUST00000301847.1	1700047M11Rik-265	660	No protein	-	lncRNA	-
ENSMUST00000301841.1	1700047M11Rik-259	658	No protein	-	lncRNA	-
ENSMUST00000301846.1	1700047M11Rik-264	639	No protein	-	lncRNA	-
ENSMUST00000301840.1	1700047M11Rik-258	625	No protein	-	lncRNA	-
ENSMUST00000301845.1	1700047M11Rik-263	589	No protein	-	lncRNA	-
ENSMUST00000301850.1	1700047M11Rik-268	532	No protein	-	lncRNA	-
ENSMUST00000301852.1	1700047M11Rik-270	530	No protein	-	lncRNA	-
ENSMUST00000301848.1	1700047M11Rik-266	528	No protein	-	lncRNA	-
ENSMUST00000301853.1	1700047M11Rik-271	504	No protein	-	lncRNA	-
ENSMUST00000301854.1	1700047M11Rik-272	486	No protein	-	lncRNA	-
ENSMUST00000301849.1	1700047M11Rik-267	457	No protein	-	lncRNA	-
ENSMUST00000301858.1	1700047M11Rik-276	429	No protein	-	lncRNA	-
ENSMUST00000301851.1	1700047M11Rik-269	396	No protein	-	lncRNA	-
ENSMUST00000301857.1	1700047M11Rik-275	315	No protein	-	lncRNA	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,656 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000189594.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000189594.3 1700047M11Rik-202

Summary

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Transcript: ENSMUST00000189594.3 1700047M11Rik-202

Summary

About Us

Get help

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