Transcript: ENSMUST00000188936.2 Gm19744-204

Description

predicted gene, 19744 [Source:MGI Symbol;Acc:MGI:5011929]

Location

Chromosome 8: 49,308,452-49,322,936 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1045 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000100706.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000185458.2	Gm19744-201	316	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000245745.1	Gm19744-207	2511	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000188936.2	Gm19744-204	4533	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000187946.8	Gm19744-203	2331	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000246074.2	Gm19744-209	2230	No protein	-	lncRNA	-
ENSMUST00000305249.1	Gm19744-230	2202	No protein	-	lncRNA	-
ENSMUST00000190967.3	Gm19744-206	2152	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000305252.1	Gm19744-233	2146	No protein	-	lncRNA	-
ENSMUST00000305230.1	Gm19744-211	2137	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000305237.1	Gm19744-218	2112	No protein	-	lncRNA	-
ENSMUST00000305238.1	Gm19744-219	2103	No protein	-	lncRNA	-
ENSMUST00000305244.1	Gm19744-225	2040	No protein	-	lncRNA	-
ENSMUST00000305234.1	Gm19744-215	1984	No protein	-	lncRNA	-
ENSMUST00000305236.1	Gm19744-217	1982	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000305235.1	Gm19744-216	1938	No protein	-	lncRNA	-
ENSMUST00000305233.1	Gm19744-214	1866	No protein	-	lncRNA	-
ENSMUST00000305229.1	Gm19744-210	1845	No protein	-	lncRNA	-
ENSMUST00000305231.1	Gm19744-212	1820	No protein	-	lncRNA	-
ENSMUST00000305242.1	Gm19744-223	1739	No protein	-	lncRNA	-
ENSMUST00000305245.1	Gm19744-226	1732	No protein	-	lncRNA	-
ENSMUST00000305239.1	Gm19744-220	1719	No protein	-	lncRNA	-
ENSMUST00000305232.1	Gm19744-213	1658	No protein	-	lncRNA	-
ENSMUST00000305250.1	Gm19744-231	1623	No protein	-	lncRNA	-
ENSMUST00000305240.1	Gm19744-221	1610	No protein	-	lncRNA	-
ENSMUST00000305253.1	Gm19744-234	1457	No protein	-	lncRNA	-
ENSMUST00000245775.1	Gm19744-208	1435	No protein	-	lncRNA	-
ENSMUST00000305246.1	Gm19744-227	1377	No protein	-	lncRNA	-
ENSMUST00000305241.1	Gm19744-222	1344	No protein	-	lncRNA	-
ENSMUST00000186135.2	Gm19744-202	948	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000305247.1	Gm19744-228	812	No protein	-	lncRNA	-
ENSMUST00000305248.1	Gm19744-229	796	No protein	-	lncRNA	-
ENSMUST00000305243.1	Gm19744-224	692	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000305251.1	Gm19744-232	604	No protein	-	lncRNA	-
ENSMUST00000305254.1	Gm19744-235	450	No protein	-	lncRNA	-
ENSMUST00000189912.2	Gm19744-205	184	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 4,533 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000188936.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000188936.2 Gm19744-204

Summary

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Transcript: ENSMUST00000188936.2 Gm19744-204

Summary

About Us

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