Transcript: ENSMUST00000185541.2 A330087D11Rik-201

Description

RIKEN cDNA A330087D11 gene [Source:MGI Symbol;Acc:MGI:3028066]

Location

Chromosome 7: 29,259,790-29,262,240 reverse strand.

About this transcript

This transcript has 1 exon and is associated with 560 variant alleles.

Gene

This transcript is a product of gene ENSMUSG00000100111.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000370948.1	A330087D11Rik-203	355	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000185541.2	A330087D11Rik-201	2451	No protein	-	lncRNA	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000370959.1	A330087D11Rik-214	1543	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000370954.1	A330087D11Rik-209	1479	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000187265.3	A330087D11Rik-202	1334	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000370955.1	A330087D11Rik-210	1245	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000370950.1	A330087D11Rik-205	999	No protein	-	lncRNA	-
ENSMUST00000370960.1	A330087D11Rik-215	949	No protein	-	lncRNA	-
ENSMUST00000370952.1	A330087D11Rik-207	806	No protein	-	lncRNA	-
ENSMUST00000370956.1	A330087D11Rik-211	747	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000370958.1	A330087D11Rik-213	674	No protein	-	lncRNA	-
ENSMUST00000370965.1	A330087D11Rik-220	654	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000370962.1	A330087D11Rik-217	652	No protein	-	lncRNA	-
ENSMUST00000370966.1	A330087D11Rik-221	630	No protein	-	lncRNA	-
ENSMUST00000370963.1	A330087D11Rik-218	564	No protein	-	lncRNA	-
ENSMUST00000370961.1	A330087D11Rik-216	548	No protein	-	lncRNA	-
ENSMUST00000370964.1	A330087D11Rik-219	541	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000370949.1	A330087D11Rik-204	489	No protein	-	lncRNA	-
ENSMUST00000370957.1	A330087D11Rik-212	441	No protein	-	lncRNA	-
ENSMUST00000370953.1	A330087D11Rik-208	423	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000370968.1	A330087D11Rik-223	343	No protein	-	lncRNA	-
ENSMUST00000370970.1	A330087D11Rik-225	314	No protein	-	lncRNA	-
ENSMUST00000370969.1	A330087D11Rik-224	286	No protein	-	lncRNA	-
ENSMUST00000370951.1	A330087D11Rik-206	263	No protein	-	lncRNA	-
ENSMUST00000370967.1	A330087D11Rik-222	252	No protein	-	lncRNA	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 2,451 bps,

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000185541.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

Transcript: ENSMUST00000185541.2 A330087D11Rik-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000185541.2 A330087D11Rik-201

Summary

About Us

Get help

Our sister sites

Follow us