Transcript: ENSMUST00000180921.2 Gm49291-201

Description

predicted gene, 49291 [Source:MGI Symbol;Acc:MGI:6118781]

Location

Chromosome 13: 48,197,707-48,416,099 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 10685 variant alleles and maps to 62 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000114860.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000180921.2	Gm49291-201	2816	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000181053.3	Gm49291-202	2312	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000297585.1	Gm49291-221	1323	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000225626.2	Gm49291-203	1247	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000280695.1	Gm49291-204	1214	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000297588.1	Gm49291-224	841	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000297587.1	Gm49291-223	811	No protein	-	lncRNA	-
ENSMUST00000280696.1	Gm49291-205	734	No protein	-	lncRNA	-
ENSMUST00000297589.1	Gm49291-225	723	No protein	-	lncRNA	-
ENSMUST00000280704.1	Gm49291-213	687	No protein	-	lncRNA	-
ENSMUST00000280699.1	Gm49291-208	666	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000280697.1	Gm49291-206	662	No protein	-	lncRNA	-
ENSMUST00000280709.1	Gm49291-218	661	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000297304.1	Gm49291-220	639	No protein	-	lncRNA	-
ENSMUST00000280698.1	Gm49291-207	620	No protein	-	lncRNA	-
ENSMUST00000280706.1	Gm49291-215	594	No protein	-	lncRNA	-
ENSMUST00000280701.1	Gm49291-210	571	No protein	-	lncRNA	-
ENSMUST00000298078.1	Gm49291-227	567	No protein	-	lncRNA	-
ENSMUST00000297586.1	Gm49291-222	552	No protein	-	lncRNA	-
ENSMUST00000280710.1	Gm49291-219	518	No protein	-	lncRNA	-
ENSMUST00000280700.1	Gm49291-209	517	No protein	-	lncRNA	-
ENSMUST00000280705.1	Gm49291-214	501	No protein	-	lncRNA	-
ENSMUST00000298079.1	Gm49291-228	476	No protein	-	lncRNA	-
ENSMUST00000280703.1	Gm49291-212	465	No protein	-	lncRNA	-
ENSMUST00000280707.1	Gm49291-216	449	No protein	-	lncRNA	-
ENSMUST00000280708.1	Gm49291-217	445	No protein	-	lncRNA	-
ENSMUST00000298077.1	Gm49291-226	419	No protein	-	lncRNA	-
ENSMUST00000298080.1	Gm49291-229	395	No protein	-	lncRNA	-
ENSMUST00000298081.1	Gm49291-230	395	No protein	-	lncRNA	-
ENSMUST00000280702.1	Gm49291-211	395	No protein	-	lncRNA	-
ENSMUST00000298083.1	Gm49291-232	368	No protein	-	lncRNA	-
ENSMUST00000298082.1	Gm49291-231	348	No protein	-	lncRNA	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,816 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000180921.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000180921.2 Gm49291-201

Summary

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Transcript: ENSMUST00000180921.2 Gm49291-201

Summary

About Us

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