Transcript: ENSMUST00000180837.3 9330185C12Rik-201

Description

RIKEN cDNA 9330185C12 gene [Source:MGI Symbol;Acc:MGI:1924761]

Location

Chromosome 1: 113,819,115-113,891,899 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 5294 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000097648.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000180837.3	9330185C12Rik-201	1044	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000294666.1	9330185C12Rik-205	782	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000294667.1	9330185C12Rik-206	622	No protein	-	lncRNA	-
ENSMUST00000294665.1	9330185C12Rik-204	578	No protein	-	lncRNA	-
ENSMUST00000294664.1	9330185C12Rik-203	527	No protein	-	lncRNA	-
ENSMUST00000294663.1	9330185C12Rik-202	439	No protein	-	lncRNA	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,044 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000180837.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000180837.3 9330185C12Rik-201

Summary

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Transcript: ENSMUST00000180837.3 9330185C12Rik-201

Summary

About Us

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