Transcript: ENSMUST00000169540.8 Magea5-202

Description

MAGE family member A5 [Source:MGI Symbol;Acc:MGI:1333838]

Gene Synonyms

Mage-a5

Location

Chromosome X: 153,836,057-153,844,549 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 1999 variant alleles and maps to 244 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000079349.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000169540.8	Magea5-202	1563	320aa	ENSMUSP00000132644.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30492	O89009	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000069556.4	Magea5-201	1360	320aa	ENSMUSP00000065852.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30492	O89009	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 1,563 bps, Translation length: 320 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS30492

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000169540.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000169540.8 Magea5-202

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Transcript: ENSMUST00000169540.8 Magea5-202

Summary

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