Transcript: ENSMUST00000169459.4 Pdzd7-203

Description

PDZ domain containing 7 [Source:MGI Symbol;Acc:MGI:3608325]

Gene Synonyms

EG435601, Pdzk7

Location

Chromosome 19: 45,015,929-45,034,156 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 43 domains and features, is associated with 1406 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000074818.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000169459.4	Pdzd7-203	3265	1021aa	ENSMUSP00000133273.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57145	E9Q9W7-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000237227.2	Pdzd7-205	3190	476aa	ENSMUSP00000157966.2	Nonsense mediated decay		E9Q9W7-3	-
ENSMUST00000145391.9	Pdzd7-202	3161	553aa	ENSMUSP00000119002.3	Nonsense mediated decay		E9Q9W7-2	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000237962.2	Pdzd7-207	3100	289aa	ENSMUSP00000157471.2	Nonsense mediated decay		E9Q9W7-4	-
ENSMUST00000237077.2	Pdzd7-204	3008	289aa	ENSMUSP00000157527.2	Nonsense mediated decay		E9Q9W7-4	-
ENSMUST00000237833.2	Pdzd7-206	2981	409aa	ENSMUSP00000157695.2	Nonsense mediated decay		E9Q9W7-5	-
ENSMUST00000238074.2	Pdzd7-208	2975	245aa	ENSMUSP00000157926.2	Nonsense mediated decay		X4ZEG9	-
ENSMUST00000038901.6	Pdzd7-201	1799	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,265 bps, Translation length: 1,021 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: E9Q9W7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS57145

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000169459.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000169459.4 Pdzd7-203

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Transcript: ENSMUST00000169459.4 Pdzd7-203

Summary

About Us

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