Transcript: ENSMUST00000166193.9 Igfn1-203

Description

immunoglobulin-like and fibronectin type III domain containing 1 [Source:MGI Symbol;Acc:MGI:3045352]

Gene Synonyms

9830123M21Rik

Location

Chromosome 1: 135,881,323-135,934,080 reverse strand.

About this transcript

This transcript has 27 exons, is annotated with 82 domains and features, is associated with 3803 variant alleles and maps to 233 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000051985.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000166193.9	Igfn1-203	8989	2849aa	ENSMUSP00000129680.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48379	Q3KNY0-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000124134.3	Igfn1-201	3661	1221aa	ENSMUSP00000119230.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6QKE4	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000140703.8	Igfn1-202	1770	208aa	ENSMUSP00000139810.2	Nonsense mediated decay		A0A087WPK2	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 27, Coding exons: 27, Transcript length: 8,989 bps, Translation length: 2,849 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3KNY0

CCDS

This transcript is a member of the Mouse CCDS set: CCDS48379

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000166193.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000166193.9 Igfn1-203

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Transcript: ENSMUST00000166193.9 Igfn1-203

Summary

About Us

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