Transcript: ENSMUST00000163394.3 Pnldc1-201

Description

poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2685159]

Gene Synonyms

LOC240023

Location

Chromosome 17: 13,107,616-13,129,117 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 9 domains and features, is associated with 1513 variant alleles and maps to 280 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000073460.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000163394.3	Pnldc1-201	2092	531aa	ENSMUSP00000129377.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49948	B2RXZ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232982.2	Pnldc1-202	620	206aa	ENSMUSP00000156864.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WD69	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000233474.2	Pnldc1-205	2004	315aa	ENSMUSP00000156494.2	Nonsense mediated decay		A0A3B2WCF7	-
ENSMUST00000233548.2	Pnldc1-206	1666	261aa	ENSMUSP00000156659.2	Nonsense mediated decay		A0A3B2WCS3	-
ENSMUST00000233189.2	Pnldc1-204	522	25aa	ENSMUSP00000156846.2	Nonsense mediated decay		A0A3B2WD45	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000233098.2	Pnldc1-203	432	34aa	ENSMUSP00000156408.2	Nonsense mediated decay		A0A3B2WCA0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000233711.2	Pnldc1-207	414	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,092 bps, Translation length: 531 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: B2RXZ1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49948

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000163394.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000163394.3 Pnldc1-201

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Transcript: ENSMUST00000163394.3 Pnldc1-201

Summary

About Us

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