Transcript: ENSMUST00000155540.4 5730437C11Rik-201

Description

RIKEN cDNA 5730437C11 gene [Source:MGI Symbol;Acc:MGI:1917808]

Location

Chromosome 3: 98,842,883-98,848,833 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 941 variant alleles and maps to 42 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000085121.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000155540.4	5730437C11Rik-201	784	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000341648.1	5730437C11Rik-211	640	No protein	-	lncRNA	-
ENSMUST00000341639.1	5730437C11Rik-202	569	No protein	-	lncRNA	-
ENSMUST00000341641.1	5730437C11Rik-204	530	No protein	-	lncRNA	-
ENSMUST00000341642.1	5730437C11Rik-205	503	No protein	-	lncRNA	-
ENSMUST00000341643.1	5730437C11Rik-206	493	No protein	-	lncRNA	-
ENSMUST00000341645.1	5730437C11Rik-208	483	No protein	-	lncRNA	-
ENSMUST00000341640.1	5730437C11Rik-203	464	No protein	-	lncRNA	-
ENSMUST00000341646.1	5730437C11Rik-209	431	No protein	-	lncRNA	-
ENSMUST00000341647.1	5730437C11Rik-210	429	No protein	-	lncRNA	-
ENSMUST00000341644.1	5730437C11Rik-207	392	No protein	-	lncRNA	-
ENSMUST00000341649.1	5730437C11Rik-212	351	No protein	-	lncRNA	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 784 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000155540.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000155540.4 5730437C11Rik-201

Summary

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Transcript: ENSMUST00000155540.4 5730437C11Rik-201

Summary

About Us

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