Transcript: ENSMUST00000154471.10 C130046K22Rik-202

Description

RIKEN cDNA C130046K22 gene [Source:MGI Symbol;Acc:MGI:3026935]

Location

Chromosome 11: 103,588,454-103,596,495 forward strand.

About this transcript

This transcript has 2 exons, is associated with 819 variant alleles and maps to 61 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000085154.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000242367.2	C130046K22Rik-204	1393	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000154471.10	C130046K22Rik-202	3409	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000129780.3	C130046K22Rik-201	1843	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000287000.1	C130046K22Rik-206	1837	No protein	-	lncRNA	-
ENSMUST00000246205.2	C130046K22Rik-205	1769	No protein	-	lncRNA	-
ENSMUST00000242106.2	C130046K22Rik-203	1520	No protein	-	lncRNA	-
ENSMUST00000287004.1	C130046K22Rik-210	1453	No protein	-	lncRNA	-
ENSMUST00000287002.1	C130046K22Rik-208	1442	No protein	-	lncRNA	-
ENSMUST00000287007.1	C130046K22Rik-213	1370	No protein	-	lncRNA	-
ENSMUST00000287003.1	C130046K22Rik-209	1264	No protein	-	lncRNA	-
ENSMUST00000287001.1	C130046K22Rik-207	765	No protein	-	lncRNA	-
ENSMUST00000287005.1	C130046K22Rik-211	549	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000287006.1	C130046K22Rik-212	417	No protein	-	lncRNA	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 3,409 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000154471.10

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000154471.10 C130046K22Rik-202

Summary

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Transcript: ENSMUST00000154471.10 C130046K22Rik-202

Summary

About Us

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