Transcript: ENSMUST00000149609.4 Gm13830-204

Description

predicted gene 13830 [Source:MGI Symbol;Acc:MGI:3651141]

Location

Chromosome 5: 115,439,153-115,457,267 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1399 variant alleles and maps to 19 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000086368.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000149609.4	Gm13830-204	1877	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000201195.4	Gm13830-205	1335	No protein	-	lncRNA	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000262982.1	Gm13830-217	1228	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000262995.1	Gm13830-230	825	No protein	-	lncRNA	-
ENSMUST00000262983.1	Gm13830-218	821	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000262987.1	Gm13830-222	790	No protein	-	lncRNA	-
ENSMUST00000262996.1	Gm13830-231	772	No protein	-	lncRNA	-
ENSMUST00000262981.1	Gm13830-216	737	No protein	-	lncRNA	-
ENSMUST00000148916.3	Gm13830-203	683	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000262994.1	Gm13830-229	675	No protein	-	lncRNA	-
ENSMUST00000245408.2	Gm13830-207	630	No protein	-	lncRNA	-
ENSMUST00000124378.3	Gm13830-201	586	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000262980.1	Gm13830-215	584	No protein	-	lncRNA	-
ENSMUST00000262993.1	Gm13830-228	582	No protein	-	lncRNA	-
ENSMUST00000262989.1	Gm13830-224	581	No protein	-	lncRNA	-
ENSMUST00000262986.1	Gm13830-221	542	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242776.2	Gm13830-206	537	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000262979.1	Gm13830-214	515	No protein	-	lncRNA	-
ENSMUST00000262974.1	Gm13830-209	506	No protein	-	lncRNA	-
ENSMUST00000262978.1	Gm13830-213	491	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000262984.1	Gm13830-219	476	No protein	-	lncRNA	-
ENSMUST00000262973.1	Gm13830-208	469	No protein	-	lncRNA	-
ENSMUST00000262990.1	Gm13830-225	466	No protein	-	lncRNA	-
ENSMUST00000262992.1	Gm13830-227	453	No protein	-	lncRNA	-
ENSMUST00000144202.4	Gm13830-202	423	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000262977.1	Gm13830-212	423	No protein	-	lncRNA	-
ENSMUST00000262975.1	Gm13830-210	409	No protein	-	lncRNA	-
ENSMUST00000262985.1	Gm13830-220	373	No protein	-	lncRNA	-
ENSMUST00000262988.1	Gm13830-223	342	No protein	-	lncRNA	-
ENSMUST00000262991.1	Gm13830-226	331	No protein	-	lncRNA	-
ENSMUST00000262976.1	Gm13830-211	312	No protein	-	lncRNA	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,877 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000149609.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000149609.4 Gm13830-204

Summary

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Transcript: ENSMUST00000149609.4 Gm13830-204

Summary

About Us

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