Transcript: ENSMUST00000144026.3 Sox5it-201

Description

SRY (sex determining region Y)-box 5, intronic transcript [Source:MGI Symbol;Acc:MGI:3642586]

Gene Synonyms

Gm10396

Location

Chromosome 6: 144,616,147-144,618,466 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 856 variant alleles and maps to 60 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000072677.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000288465.1	Sox5it-202	714	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000144026.3	Sox5it-201	1233	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000288469.1	Sox5it-206	1214	No protein	-	lncRNA	-
ENSMUST00000288467.1	Sox5it-204	819	No protein	-	lncRNA	-
ENSMUST00000288468.1	Sox5it-205	788	No protein	-	lncRNA	-
ENSMUST00000288466.1	Sox5it-203	537	No protein	-	lncRNA	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,233 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000144026.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000144026.3 Sox5it-201

Summary

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Transcript: ENSMUST00000144026.3 Sox5it-201

Summary

About Us

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