Transcript: ENSMUST00000139828.3 Pramel53-202

Description

PRAME like 53 [Source:MGI Symbol;Acc:MGI:3647817]

Gene Synonyms

Gm6351

Location

Chromosome 5: 94,224,244-94,228,794 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 31 variant alleles and maps to 855 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000072821.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000139828.3	Pramel53-202	1528	481aa	ENSMUSP00000119594.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K9J7D1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000139102.2	Pramel53-201	578	165aa	ENSMUSP00000115801.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YXK9	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,528 bps, Translation length: 481 residues

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000139828.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not best-in-genome evidence [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000139828.3 Pramel53-202

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Transcript: ENSMUST00000139828.3 Pramel53-202

Summary

About Us

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