Transcript: ENSMUST00000097974.9 Nkx6-2-201

Description

NK6 homeobox 2 [Source:MGI Symbol;Acc:MGI:1352738]

Gene Synonyms

Gtx, Nkx6.2

Location

Chromosome 7: 139,159,292-139,162,713 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 523 variant alleles and maps to 204 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000041309.19 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000106095.3	Nkx6-2-202	1299	277aa	ENSMUSP00000101701.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40170	D3Z4R4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000097974.9	Nkx6-2-201	1907	277aa	ENSMUSP00000095588.3	Nonsense mediated decay	CCDS40170	D3Z4R4	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000409761.1	Nkx6-2-203	1378	231aa	ENSMUSP00000188124.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,907 bps, Translation length: 277 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS40170

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000097974.9

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000097974.9 Nkx6-2-201

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Transcript: ENSMUST00000097974.9 Nkx6-2-201

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