Transcript: ENSMUST00000088827.9 Mapk12-201

Description

mitogen-activated protein kinase 12 [Source:MGI Symbol;Acc:MGI:1353438]

Gene Synonyms

Erk6, P38gamma, Prkm12, Sapk3

Location

Chromosome 15: 89,014,785-89,024,946 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 937 variant alleles and maps to 226 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022610.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000088827.9	Mapk12-201	1932	367aa	ENSMUSP00000086207.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27740	O08911	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000522242.1	Mapk12-210	1902	357aa	ENSMUSP00000300605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000522256.1	Mapk12-224	1854	341aa	ENSMUSP00000300619.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000522259.1	Mapk12-227	1842	366aa	ENSMUSP00000300622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000522253.1	Mapk12-221	2557	220aa	ENSMUSP00000300616.1	Nonsense mediated decay		-	-
ENSMUST00000522257.1	Mapk12-225	2432	220aa	ENSMUSP00000300620.1	Nonsense mediated decay		-	-
ENSMUST00000522243.1	Mapk12-211	2083	87aa	ENSMUSP00000300606.1	Nonsense mediated decay		-	-
ENSMUST00000522255.1	Mapk12-223	2007	90aa	ENSMUSP00000300618.1	Nonsense mediated decay		-	-
ENSMUST00000522244.1	Mapk12-212	1921	93aa	ENSMUSP00000300607.1	Nonsense mediated decay		-	-
ENSMUST00000522250.1	Mapk12-218	1914	75aa	ENSMUSP00000300613.1	Nonsense mediated decay		-	-
ENSMUST00000522251.1	Mapk12-219	1893	41aa	ENSMUSP00000300614.1	Nonsense mediated decay		-	-
ENSMUST00000522252.1	Mapk12-220	1884	293aa	ENSMUSP00000300615.1	Nonsense mediated decay		-	-
ENSMUST00000522245.1	Mapk12-213	1866	75aa	ENSMUSP00000300608.1	Nonsense mediated decay		-	-
ENSMUST00000522246.1	Mapk12-214	1861	94aa	ENSMUSP00000300609.1	Nonsense mediated decay		-	-
ENSMUST00000522254.1	Mapk12-222	1821	106aa	ENSMUSP00000300617.1	Nonsense mediated decay		-	-
ENSMUST00000522247.1	Mapk12-215	1795	116aa	ENSMUSP00000300610.1	Nonsense mediated decay		-	-
ENSMUST00000522249.1	Mapk12-217	1751	87aa	ENSMUSP00000300612.1	Nonsense mediated decay		-	-
ENSMUST00000522248.1	Mapk12-216	1716	106aa	ENSMUSP00000300611.1	Nonsense mediated decay		-	-
ENSMUST00000522240.1	Mapk12-208	1691	127aa	ENSMUSP00000300603.1	Nonsense mediated decay		-	-
ENSMUST00000522258.1	Mapk12-226	1606	127aa	ENSMUSP00000300621.1	Nonsense mediated decay		-	-
ENSMUST00000522241.1	Mapk12-209	1568	97aa	ENSMUSP00000300604.1	Nonsense mediated decay		-	-
ENSMUST00000230509.2	Mapk12-205	930	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000231014.2	Mapk12-206	793	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000231056.2	Mapk12-207	445	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000230266.2	Mapk12-203	1928	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000229193.2	Mapk12-202	1832	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000230352.2	Mapk12-204	1423	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,932 bps, Translation length: 367 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O08911

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27740

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000088827.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000088827.9 Mapk12-201

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Transcript: ENSMUST00000088827.9 Mapk12-201

Summary

About Us

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