Transcript: ENSMUST00000086876.7 Pot1b-201

Description

protection of telomeres 1B [Source:MGI Symbol;Acc:MGI:1920086]

Gene Synonyms

2810458H16Rik

Location

Chromosome 17: 55,958,951-56,019,578 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 14 domains and features, is associated with 3149 variant alleles and maps to 210 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024174.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000086876.7	Pot1b-201	3523	640aa	ENSMUSP00000084089.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50147	H7BX60	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233972.2	Pot1b-205	2185	623aa	ENSMUSP00000156746.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3TNS5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000233557.2	Pot1b-203	663	133aa	ENSMUSP00000156507.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WCG4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000233802.2	Pot1b-204	3582	352aa	ENSMUSP00000156762.2	Nonsense mediated decay		A0A3B2WCZ2	-
ENSMUST00000233301.2	Pot1b-202	1813	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 17, Coding exons: 15, Transcript length: 3,523 bps, Translation length: 640 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50147

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000086876.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

confirm experimentally [Definitions]

inferred exon combination

inferred transcript model

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000086876.7 Pot1b-201

Summary

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Transcript: ENSMUST00000086876.7 Pot1b-201

Summary

About Us

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