Transcript: ENSMUST00000068686.14 Calcoco2-201

Description

calcium binding and coiled-coil domain 2 [Source:MGI Symbol;Acc:MGI:1343177]

Gene Synonyms

2410154J16Rik, Ndp52, Ndp52l1

Location

Chromosome 11: 95,989,742-96,002,818 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 1278 variant alleles and maps to 255 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000006056.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000068686.14	Calcoco2-201	2059	331aa	ENSMUSP00000087407.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59567	A2A6M5-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000552098.1	Calcoco2-202	2059	331aa	ENSMUSP00000330461.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000552099.1	Calcoco2-203	1822	252aa	ENSMUSP00000330462.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000552100.1	Calcoco2-204	1471	75aa	ENSMUSP00000330463.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,059 bps, Translation length: 331 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A2A6M5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS59567

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000068686.14

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000068686.14 Calcoco2-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSMUST00000068686.14 Calcoco2-201

Summary

About Us

Get help

Our sister sites

Follow us