Transcript: ENSMUST00000068106.5 Smim10l2a-201

Description

small integral membrane protein 10 like 2A [Source:MGI Symbol;Acc:MGI:2443645]

Gene Synonyms

6330419J24Rik, Ncrna00086

Location

Chromosome X: 55,419,946-55,423,159 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 12 domains and features, is associated with 785 variant alleles and maps to 225 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000054850.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSMUST00000068106.5	Smim10l2a-201	2393	78aa	ENSMUSP00000066705.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4J1F8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000474637.1	Smim10l2a-202	5605	78aa	ENSMUSP00000253000.1	Nonsense mediated decay	-	-
ENSMUST00000553986.1	Smim10l2a-205	2742	78aa	ENSMUSP00000332349.1	Nonsense mediated decay	-	-
ENSMUST00000474638.1	Smim10l2a-203	2645	78aa	ENSMUSP00000253001.1	Nonsense mediated decay	-	-
ENSMUST00000474639.1	Smim10l2a-204	2585	78aa	ENSMUSP00000253002.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,393 bps, Translation length: 78 residues

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000068106.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

NMD exception [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000068106.5 Smim10l2a-201

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Transcript: ENSMUST00000068106.5 Smim10l2a-201

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