Transcript: ENSMUST00000067784.9 Cdh24-201

Description

cadherin-like 24 [Source:MGI Symbol;Acc:MGI:1928330]

Gene Synonyms

1700040A22Rik, ENSMUSG00000022188, EY-cadherin, cadherin 14-like

Location

Chromosome 14: 54,868,688-54,878,831 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 58 domains and features, is associated with 1022 variant alleles and maps to 163 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000059674.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000067784.9	Cdh24-201	3499	781aa	ENSMUSP00000066005.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36923	Q6PFX6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000553249.1	Cdh24-203	2391	642aa	ENSMUSP00000331612.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000227124.2	Cdh24-202	760	253aa	ENSMUSP00000154248.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQY3	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 3,499 bps, Translation length: 781 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6PFX6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36923

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000067784.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000067784.9 Cdh24-201

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Transcript: ENSMUST00000067784.9 Cdh24-201

Summary

About Us

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