Transcript: ENSMUST00000053949.7 Shisa2-201

Description

shisa family member 2 [Source:MGI Symbol;Acc:MGI:2444716]

Gene Synonyms

9430059P22Rik, MAd2, Tmem46, mShisa, shisa

Location

Chromosome 14: 59,862,757-59,869,109 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 688 variant alleles and maps to 253 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000044461.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000053949.7	Shisa2-201	3119	295aa	ENSMUSP00000059391.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27173	Q8QZV2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000520764.1	Shisa2-203	3183	260aa	ENSMUSP00000299127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000520765.1	Shisa2-204	3306	121aa	ENSMUSP00000299128.1	Nonsense mediated decay		-	-
ENSMUST00000520766.1	Shisa2-205	3174	112aa	ENSMUSP00000299129.1	Nonsense mediated decay		-	-
ENSMUST00000224155.2	Shisa2-202	596	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 3,119 bps, Translation length: 295 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8QZV2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27173

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000053949.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000053949.7 Shisa2-201

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Transcript: ENSMUST00000053949.7 Shisa2-201

Summary

About Us

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