Transcript: ENSMUST00000045041.12 Galnt12-201

Description

polypeptide N-acetylgalactosaminyltransferase 12 [Source:MGI Symbol;Acc:MGI:2444664]

Gene Synonyms

A630062B03Rik

Location

Chromosome 4: 47,091,909-47,123,070 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 21 domains and features, is associated with 2277 variant alleles and maps to 178 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039774.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000045041.12	Galnt12-201	2288	576aa	ENSMUSP00000045721.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18158	Q60GT3 Q8BGT9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000107744.3	Galnt12-202	2104	284aa	ENSMUSP00000103373.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2ANU2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000557604.1	Galnt12-205	1928	456aa	ENSMUSP00000335967.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000434852.1	Galnt12-204	2866	122aa	ENSMUSP00000213215.1	Nonsense mediated decay		-	-
ENSMUST00000434851.1	Galnt12-203	2358	435aa	ENSMUSP00000213214.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,288 bps, Translation length: 576 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BGT9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS18158

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000045041.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000045041.12 Galnt12-201

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Transcript: ENSMUST00000045041.12 Galnt12-201

Summary

About Us

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