Transcript: ENSMUST00000044922.8 Hs3st6-201

Description

heparan sulfate (glucosamine) 3-O-sulfotransferase 6 [Source:MGI Symbol;Acc:MGI:3580487]

Location

Chromosome 17: 24,971,977-24,977,658 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 11 domains and features, is associated with 692 variant alleles and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039628.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000044922.8	Hs3st6-201	1220	342aa	ENSMUSP00000040919.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28496	A2RTI7 Q5GFD5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000469937.1	Hs3st6-205	1301	138aa	ENSMUSP00000248300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000234202.3	Hs3st6-202	1177	332aa	ENSMUSP00000157206.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZNT8	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000469938.1	Hs3st6-206	1745	138aa	ENSMUSP00000248301.1	Nonsense mediated decay		-	-
ENSMUST00000234340.2	Hs3st6-203	1357	138aa	ENSMUSP00000157161.2	Nonsense mediated decay		A0A3Q4EHY0	-
ENSMUST00000235111.2	Hs3st6-204	1263	147aa	ENSMUSP00000157084.2	Nonsense mediated decay		A0A3Q4L2U2	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,220 bps, Translation length: 342 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5GFD5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS28496

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000044922.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000044922.8 Hs3st6-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSMUST00000044922.8 Hs3st6-201

Summary

About Us

Get help

Our sister sites

Follow us