Transcript: ENSMUST00000044622.7 Epg5-201

Description

ectopic P-granules 5 autophagy tethering factor [Source:MGI Symbol;Acc:MGI:1918673]

Gene Synonyms

5430411K18Rik

Location

Chromosome 18: 77,981,680-78,078,228 forward strand.

About this transcript

This transcript has 44 exons, is annotated with 19 domains and features, is associated with 5768 variant alleles and maps to 458 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039840.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000044622.7	Epg5-201	9660	2572aa	ENSMUSP00000038681.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57126	Q80TA9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000237997.2	Epg5-203	3149	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000235433.2	Epg5-202	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 44, Coding exons: 44, Transcript length: 9,660 bps, Translation length: 2,572 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q80TA9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS57126

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000044622.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000044622.7 Epg5-201

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Transcript: ENSMUST00000044622.7 Epg5-201

Summary

About Us

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