Transcript: ENSMUST00000040990.7 Vwa8-201

Description

von Willebrand factor A domain containing 8 [Source:MGI Symbol;Acc:MGI:1919008]

Gene Synonyms

1300010F03Rik, 4932416F07Rik

Location

Chromosome 14: 79,086,492-79,439,750 forward strand.

About this transcript

This transcript has 45 exons, is annotated with 31 domains and features, is associated with 18369 variant alleles and maps to 453 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000058997.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000040990.7	Vwa8-201	7054	1905aa	ENSMUSP00000048925.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49550	Q8CC88-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000227255.2	Vwa8-202	3406	1038aa	ENSMUSP00000154270.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8CC88-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000228884.2	Vwa8-204	3236	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000228904.2	Vwa8-205	2508	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000227676.2	Vwa8-203	3823	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 45, Coding exons: 45, Transcript length: 7,054 bps, Translation length: 1,905 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8CC88

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49550

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000040990.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported partial

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000040990.7 Vwa8-201

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Transcript: ENSMUST00000040990.7 Vwa8-201

Summary

About Us

Get help

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