Transcript: ENSMUST00000040275.9 Sobp-201

Description

sine oculis binding protein [Source:MGI Symbol;Acc:MGI:1924427]

Gene Synonyms

2900009C16Rik, 5330439J01Rik, Jxc1, jc

Location

Chromosome 10: 42,878,496-43,050,526 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 27 domains and features, is associated with 8508 variant alleles and maps to 234 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038248.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000040275.9	Sobp-201	4980	864aa	ENSMUSP00000040072.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35890	Q0P5V2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000189987.2	Sobp-202	1095	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 4,980 bps, Translation length: 864 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q0P5V2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS35890

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000040275.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000040275.9 Sobp-201

Summary

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Transcript: ENSMUST00000040275.9 Sobp-201

Summary

About Us

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