Transcript: ENSMUST00000034206.7 Bbs2-201

Description

Bardet-Biedl syndrome 2 [Source:MGI Symbol;Acc:MGI:2135267]

Gene Synonyms

2410125H22Rik

Location

Chromosome 8: 94,794,580-94,825,556 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 11 domains and features, is associated with 2211 variant alleles and maps to 251 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000031755.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000034206.7	Bbs2-201	3066	721aa	ENSMUSP00000034206.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40434	Q9CWF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000383248.1	Bbs2-207	2943	680aa	ENSMUSP00000161611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000383246.1	Bbs2-205	2838	645aa	ENSMUSP00000161609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000383247.1	Bbs2-206	3968	128aa	ENSMUSP00000161610.1	Nonsense mediated decay		-	-
ENSMUST00000383245.1	Bbs2-204	3898	312aa	ENSMUSP00000161608.1	Nonsense mediated decay		-	-
ENSMUST00000383250.1	Bbs2-209	3789	312aa	ENSMUSP00000161613.1	Nonsense mediated decay		-	-
ENSMUST00000383255.1	Bbs2-214	3650	367aa	ENSMUSP00000161618.1	Nonsense mediated decay		-	-
ENSMUST00000383258.1	Bbs2-217	3409	312aa	ENSMUSP00000161621.1	Nonsense mediated decay		-	-
ENSMUST00000383257.1	Bbs2-216	2972	468aa	ENSMUSP00000161620.1	Nonsense mediated decay		-	-
ENSMUST00000383252.1	Bbs2-211	2744	513aa	ENSMUSP00000161615.1	Nonsense mediated decay		-	-
ENSMUST00000383253.1	Bbs2-212	2739	513aa	ENSMUSP00000161616.1	Nonsense mediated decay		-	-
ENSMUST00000383261.1	Bbs2-220	2644	128aa	ENSMUSP00000161624.1	Nonsense mediated decay		-	-
ENSMUST00000383254.1	Bbs2-213	2639	556aa	ENSMUSP00000161617.1	Nonsense mediated decay		-	-
ENSMUST00000383249.1	Bbs2-208	2623	367aa	ENSMUSP00000161612.1	Nonsense mediated decay		-	-
ENSMUST00000383256.1	Bbs2-215	2577	312aa	ENSMUSP00000161619.1	Nonsense mediated decay		-	-
ENSMUST00000383259.1	Bbs2-218	2543	158aa	ENSMUSP00000161622.1	Nonsense mediated decay		-	-
ENSMUST00000383260.1	Bbs2-219	2516	243aa	ENSMUSP00000161623.1	Nonsense mediated decay		-	-
ENSMUST00000383251.1	Bbs2-210	2501	367aa	ENSMUSP00000161614.1	Nonsense mediated decay		-	-
ENSMUST00000172347.2	Bbs2-203	522	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000170208.2	Bbs2-202	491	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 3,066 bps, Translation length: 721 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CWF6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS40434

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000034206.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000034206.7 Bbs2-201

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Transcript: ENSMUST00000034206.7 Bbs2-201

Summary

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