Transcript: ENSMUST00000032571.10 Nova2-201

Description

NOVA alternative splicing regulator 2 [Source:MGI Symbol;Acc:MGI:104296]

Gene Synonyms

LOC384569

Location

Chromosome 7: 18,659,813-18,699,244 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 34 domains and features, is associated with 2733 variant alleles and maps to 283 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000030411.18 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000220302.3	Nova2-202	8396	492aa	ENSMUSP00000151939.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20882	A0A1W2P872-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000032571.10	Nova2-201	8372	556aa	ENSMUSP00000032571.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1W2P872-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000469931.1	Nova2-204	8085	43aa	ENSMUSP00000248294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000469930.1	Nova2-203	4808	68aa	ENSMUSP00000248293.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 8,372 bps, Translation length: 556 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A1W2P872

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000032571.10

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENSMUST00000032571.10 Nova2-201

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Transcript: ENSMUST00000032571.10 Nova2-201

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