Transcript: ENSMUST00000030841.11 Klhl7-201

Description

kelch-like 7 [Source:MGI Symbol;Acc:MGI:1196453]

Gene Synonyms

2700038B03Rik, D5Ertd363e, Klhl6, SBBI26

Location

Chromosome 5: 24,305,596-24,365,790 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 21 domains and features, is associated with 3430 variant alleles and maps to 263 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028986.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000030841.11	Klhl7-201	2980	586aa	ENSMUSP00000030841.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19114	Q8BUL5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000510856.1	Klhl7-211	3435	594aa	ENSMUSP00000289219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000163409.6	Klhl7-202	2882	473aa	ENSMUSP00000129461.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51432	G3UW75	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000510864.1	Klhl7-219	4183	336aa	ENSMUSP00000289227.1	Nonsense mediated decay		-	-
ENSMUST00000510859.1	Klhl7-214	3553	336aa	ENSMUSP00000289222.1	Nonsense mediated decay		-	-
ENSMUST00000510852.1	Klhl7-207	3421	415aa	ENSMUSP00000289215.1	Nonsense mediated decay		-	-
ENSMUST00000510853.1	Klhl7-208	3419	43aa	ENSMUSP00000289216.1	Nonsense mediated decay		-	-
ENSMUST00000510857.1	Klhl7-212	3280	90aa	ENSMUSP00000289220.1	Nonsense mediated decay		-	-
ENSMUST00000510850.1	Klhl7-205	3191	336aa	ENSMUSP00000289213.1	Nonsense mediated decay		-	-
ENSMUST00000510851.1	Klhl7-206	3109	41aa	ENSMUSP00000289214.1	Nonsense mediated decay		-	-
ENSMUST00000200116.5	Klhl7-204	3086	422aa	ENSMUSP00000143000.2	Nonsense mediated decay		A0A0G2JF30	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000510867.1	Klhl7-222	2920	108aa	ENSMUSP00000289230.1	Nonsense mediated decay		-	-
ENSMUST00000510866.1	Klhl7-221	2867	50aa	ENSMUSP00000289229.1	Nonsense mediated decay		-	-
ENSMUST00000510865.1	Klhl7-220	2845	117aa	ENSMUSP00000289228.1	Nonsense mediated decay		-	-
ENSMUST00000510861.1	Klhl7-216	2807	149aa	ENSMUSP00000289224.1	Nonsense mediated decay		-	-
ENSMUST00000510863.1	Klhl7-218	2802	43aa	ENSMUSP00000289226.1	Nonsense mediated decay		-	-
ENSMUST00000510855.1	Klhl7-210	2744	42aa	ENSMUSP00000289218.1	Nonsense mediated decay		-	-
ENSMUST00000510862.1	Klhl7-217	2740	43aa	ENSMUSP00000289225.1	Nonsense mediated decay		-	-
ENSMUST00000510860.1	Klhl7-215	2618	117aa	ENSMUSP00000289223.1	Nonsense mediated decay		-	-
ENSMUST00000510854.1	Klhl7-209	2505	42aa	ENSMUSP00000289217.1	Nonsense mediated decay		-	-
ENSMUST00000510858.1	Klhl7-213	2439	41aa	ENSMUSP00000289221.1	Nonsense mediated decay		-	-
ENSMUST00000199530.2	Klhl7-203	1589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,980 bps, Translation length: 586 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BUL5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS19114

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000030841.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000030841.11 Klhl7-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSMUST00000030841.11 Klhl7-201

Summary

About Us

Get help

Our sister sites

Follow us