Transcript: ENSMUST00000029875.5 Pip4p2-201

Description

phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 [Source:MGI Symbol;Acc:MGI:1919769]

Gene Synonyms

2610319K07Rik, Tmem55a

Location

Chromosome 4: 14,864,054-14,915,497 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 13 domains and features, is associated with 3682 variant alleles and maps to 226 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028221.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000029875.5	Pip4p2-201	2682	257aa	ENSMUSP00000029875.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17981	Q9CZX7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000402871.1	Pip4p2-210	2658	249aa	ENSMUSP00000181234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000402866.1	Pip4p2-205	2613	234aa	ENSMUSP00000181229.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000402874.1	Pip4p2-213	2451	180aa	ENSMUSP00000181237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000402876.1	Pip4p2-215	2000	180aa	ENSMUSP00000181239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000402865.1	Pip4p2-204	2785	40aa	ENSMUSP00000181228.1	Nonsense mediated decay		-	-
ENSMUST00000402869.1	Pip4p2-208	2702	36aa	ENSMUSP00000181232.1	Nonsense mediated decay		-	-
ENSMUST00000402863.1	Pip4p2-202	2639	89aa	ENSMUSP00000181226.1	Nonsense mediated decay		-	-
ENSMUST00000402867.1	Pip4p2-206	2493	166aa	ENSMUSP00000181230.1	Nonsense mediated decay		-	-
ENSMUST00000402864.1	Pip4p2-203	2459	38aa	ENSMUSP00000181227.1	Nonsense mediated decay		-	-
ENSMUST00000402868.1	Pip4p2-207	2381	47aa	ENSMUSP00000181231.1	Nonsense mediated decay		-	-
ENSMUST00000402872.1	Pip4p2-211	2279	40aa	ENSMUSP00000181235.1	Nonsense mediated decay		-	-
ENSMUST00000402873.1	Pip4p2-212	1971	38aa	ENSMUSP00000181236.1	Nonsense mediated decay		-	-
ENSMUST00000402870.1	Pip4p2-209	1961	38aa	ENSMUSP00000181233.1	Nonsense mediated decay		-	-
ENSMUST00000402875.1	Pip4p2-214	1870	57aa	ENSMUSP00000181238.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,682 bps, Translation length: 257 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CZX7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17981

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000029875.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000029875.5 Pip4p2-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSMUST00000029875.5 Pip4p2-201

Summary

About Us

Get help

Our sister sites

Follow us