Transcript: ENSMUST00000029480.10 Prpf38b-201

Description

PRP38 pre-mRNA processing factor 38 (yeast) domain containing B [Source:MGI Symbol;Acc:MGI:1914171]

Gene Synonyms

1110021E09Rik

Location

Chromosome 3: 108,810,123-108,819,044 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 29 domains and features, is associated with 993 variant alleles and maps to 276 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000027881.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000029480.10	Prpf38b-201	3027	542aa	ENSMUSP00000029480.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17770	Q80SY5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000402604.1	Prpf38b-218	2940	513aa	ENSMUSP00000180967.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000402607.1	Prpf38b-221	2814	471aa	ENSMUSP00000180970.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000402599.1	Prpf38b-213	5457	94aa	ENSMUSP00000180962.1	Nonsense mediated decay		-	-
ENSMUST00000402595.1	Prpf38b-209	4918	190aa	ENSMUSP00000180958.1	Nonsense mediated decay		-	-
ENSMUST00000402603.1	Prpf38b-217	4906	192aa	ENSMUSP00000180966.1	Nonsense mediated decay		-	-
ENSMUST00000402608.1	Prpf38b-222	4881	182aa	ENSMUSP00000180971.1	Nonsense mediated decay		-	-
ENSMUST00000402596.1	Prpf38b-210	4454	94aa	ENSMUSP00000180959.1	Nonsense mediated decay		-	-
ENSMUST00000402597.1	Prpf38b-211	3591	94aa	ENSMUSP00000180960.1	Nonsense mediated decay		-	-
ENSMUST00000402598.1	Prpf38b-212	3537	182aa	ENSMUSP00000180961.1	Nonsense mediated decay		-	-
ENSMUST00000402600.1	Prpf38b-214	3535	95aa	ENSMUSP00000180963.1	Nonsense mediated decay		-	-
ENSMUST00000402602.1	Prpf38b-216	3333	100aa	ENSMUSP00000180965.1	Nonsense mediated decay		-	-
ENSMUST00000550897.1	Prpf38b-230	3289	100aa	ENSMUSP00000329260.1	Nonsense mediated decay		-	-
ENSMUST00000402606.1	Prpf38b-220	3199	94aa	ENSMUSP00000180969.1	Nonsense mediated decay		-	-
ENSMUST00000402601.1	Prpf38b-215	3173	202aa	ENSMUSP00000180964.1	Nonsense mediated decay		-	-
ENSMUST00000402605.1	Prpf38b-219	3158	182aa	ENSMUSP00000180968.1	Nonsense mediated decay		-	-
ENSMUST00000129273.8	Prpf38b-204	3050	94aa	ENSMUSP00000143724.2	Nonsense mediated decay		A0A0G2JGW4	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000199735.5	Prpf38b-208	2508	182aa	ENSMUSP00000142929.2	Nonsense mediated decay		A0A0G2JEW4	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000402613.1	Prpf38b-227	2417	94aa	ENSMUSP00000180976.1	Nonsense mediated decay		-	-
ENSMUST00000402611.1	Prpf38b-225	2375	94aa	ENSMUSP00000180974.1	Nonsense mediated decay		-	-
ENSMUST00000402614.1	Prpf38b-228	2297	97aa	ENSMUSP00000180977.1	Nonsense mediated decay		-	-
ENSMUST00000402610.1	Prpf38b-224	2279	182aa	ENSMUSP00000180973.1	Nonsense mediated decay		-	-
ENSMUST00000402612.1	Prpf38b-226	2258	97aa	ENSMUSP00000180975.1	Nonsense mediated decay		-	-
ENSMUST00000402609.1	Prpf38b-223	2161	196aa	ENSMUSP00000180972.1	Nonsense mediated decay		-	-
ENSMUST00000550898.1	Prpf38b-231	1738	198aa	ENSMUSP00000329261.1	Nonsense mediated decay		-	-
ENSMUST00000402615.1	Prpf38b-229	1566	182aa	ENSMUSP00000180978.1	Nonsense mediated decay		-	-
ENSMUST00000127478.8	Prpf38b-203	556	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000156808.2	Prpf38b-206	531	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000197805.2	Prpf38b-207	3814	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000145720.2	Prpf38b-205	2108	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000125208.2	Prpf38b-202	977	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,027 bps, Translation length: 542 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q80SY5

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17770

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000029480.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000029480.10 Prpf38b-201

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Transcript: ENSMUST00000029480.10 Prpf38b-201

Summary

About Us

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