Transcript: ENSMUST00000027580.11 Slc35f5-201

Description

solute carrier family 35, member F5 [Source:MGI Symbol;Acc:MGI:1921400]

Gene Synonyms

1300003P13Rik

Location

Chromosome 1: 125,488,753-125,523,557 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 38 domains and features, is associated with 2436 variant alleles and maps to 244 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000026342.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000027580.11	Slc35f5-201	2733	524aa	ENSMUSP00000027580.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35694	Q8R314	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000190037.7	Slc35f5-203	627	170aa	ENSMUSP00000139639.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087WP59	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000189443.2	Slc35f5-202	756	122aa	ENSMUSP00000140918.2	Nonsense mediated decay		A0A087WS66	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 2,733 bps, Translation length: 524 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8R314

CCDS

This transcript is a member of the Mouse CCDS set: CCDS35694

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000027580.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000027580.11 Slc35f5-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000027580.11 Slc35f5-201

Summary

About Us

Get help

Our sister sites

Follow us