Transcript: ENSMUST00000025521.10 Cdx1-201

Description

caudal type homeobox 1 [Source:MGI Symbol;Acc:MGI:88360]

Gene Synonyms

Cdx, Cdx-1

Location

Chromosome 18: 61,151,934-61,169,292 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 29 domains and features, is associated with 1398 variant alleles and maps to 174 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024619.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025521.10	Cdx1-201	1771	268aa	ENSMUSP00000025521.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29279	P18111	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000552394.1	Cdx1-203	1766	187aa	ENSMUSP00000330757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000552393.1	Cdx1-202	1896	168aa	ENSMUSP00000330756.1	Nonsense mediated decay		-	-
ENSMUST00000552395.1	Cdx1-204	1854	154aa	ENSMUSP00000330758.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,771 bps, Translation length: 268 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P18111

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29279

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000025521.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000025521.10 Cdx1-201

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Transcript: ENSMUST00000025521.10 Cdx1-201

Summary

About Us

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