Transcript: ENSMUST00000023550.10 Pdia5-201

Description

protein disulfide isomerase associated 5 [Source:MGI Symbol;Acc:MGI:1919849]

Gene Synonyms

2700053F16Rik, Pdir

Location

Chromosome 16: 35,217,682-35,311,253 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 34 domains and features, is associated with 4561 variant alleles and maps to 244 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022844.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023550.10	Pdia5-201	1819	517aa	ENSMUSP00000023550.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37323	Q921X9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000400705.1	Pdia5-213	1126	262aa	ENSMUSP00000179068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000400697.1	Pdia5-205	2553	316aa	ENSMUSP00000179060.1	Nonsense mediated decay		-	-
ENSMUST00000400701.1	Pdia5-209	2502	316aa	ENSMUSP00000179064.1	Nonsense mediated decay		-	-
ENSMUST00000400704.1	Pdia5-212	2424	301aa	ENSMUSP00000179067.1	Nonsense mediated decay		-	-
ENSMUST00000400703.1	Pdia5-211	2047	316aa	ENSMUSP00000179066.1	Nonsense mediated decay		-	-
ENSMUST00000562531.1	Pdia5-214	1821	57aa	ENSMUSP00000340894.1	Nonsense mediated decay		-	-
ENSMUST00000400699.1	Pdia5-207	1809	346aa	ENSMUSP00000179062.1	Nonsense mediated decay		-	-
ENSMUST00000400702.1	Pdia5-210	1713	65aa	ENSMUSP00000179065.1	Nonsense mediated decay		-	-
ENSMUST00000400700.1	Pdia5-208	1690	260aa	ENSMUSP00000179063.1	Nonsense mediated decay		-	-
ENSMUST00000400698.1	Pdia5-206	1674	260aa	ENSMUSP00000179061.1	Nonsense mediated decay		-	-
ENSMUST00000231595.2	Pdia5-203	745	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000231779.2	Pdia5-204	679	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000231406.2	Pdia5-202	706	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 1,819 bps, Translation length: 517 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q921X9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37323

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000023550.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000023550.10 Pdia5-201

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Transcript: ENSMUST00000023550.10 Pdia5-201

Summary

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