Transcript: ENSMUST00000022337.12 Cdhr1-201

Description

cadherin-related family member 1 [Source:MGI Symbol;Acc:MGI:2157782]

Gene Synonyms

Pcdh21, Prcad

Location

Chromosome 14: 36,799,813-36,820,484 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 61 domains and features, is associated with 1686 variant alleles and maps to 229 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021803.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022337.12	Cdhr1-201	4513	859aa	ENSMUSP00000022337.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26952	Q8VHP6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000394221.1	Cdhr1-202	4511	726aa	ENSMUSP00000172584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394224.1	Cdhr1-205	4414	826aa	ENSMUSP00000172587.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000394223.1	Cdhr1-204	4659	124aa	ENSMUSP00000172586.1	Nonsense mediated decay		-	-
ENSMUST00000394222.1	Cdhr1-203	4655	127aa	ENSMUSP00000172585.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 4,513 bps, Translation length: 859 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8VHP6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26952

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000022337.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000022337.12 Cdhr1-201

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Transcript: ENSMUST00000022337.12 Cdhr1-201

Summary

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